Contact info
Lawrence Berkeley National Laboratory
Physical Biosciences Division
One Cyclotron Road
Mailstop: 977-152
Berkeley, California 94720-3206
USA

Location: 717 Potter St., Bldg 977, Rm 266
Phone: (510) 495-2628
Fax: (510) 495-2629
Email: amukhopadhyay@lbl.gov
Alt Email: amukhopa@alumni.uchicago.edu

Projects

• The DOE, Genomics GTL: Environmental Stress Pathway Project
  • Functional Genomics in Desulfovibrio vulgaris Hildenborough
• Elucidation of Two component systems in Desulfovibrio vulgaris Hildenborough
  
• Joint Bio Energy Institute JBEI
  • Stress response elucidation in host microbe optimization for Biofuel synthesis
  • Omics technologies
    

Publications

1. J. L. Fortman, S. Chhabra, A. Mukhopadhyay, H. Chou, T-S. Lee, E. Steen, J. D. Keasling Biofuel alternatives to Ethanol: Pumping the mocrobial well TiBTech (in press) 2008.
   
2. S. P. Gaucher, A. M. Redding, A. Mukhopadhyay, J. D. Keasling, A. K. Singh Post-translational Modifications of Desulfovibrio vulgaris Hildenborough Sulfate Reduction Pathway Proteins, Journal of Proteomic Research (in press) 2008.
   
3. A. S. Shaikh, Y. J. Tang, A. Mukhopadhyay, J. D. Keasling Isotopomer Distributions in Amino Acids from a Highly Expressed Protein as a Proxy for Those from Total Protein Analytical Chem 2008
   
4. A. Mukhopadhyay, A. M. Redding, M. P. Joachimiak, A. P. Arkin, S. E. Borglin, P. S. Dehal, R. Chakraborty, J. T. Geller, T. C. Hazen, Q. He, D. C. Joyner, V. J. J. Martin, J. D. Wall, Z-K. Yang, J. Zhou, J. D. Keasling Cell wide responses to low oxygen exposure in Desulfovibrio vulgaris Hildenborough 2007
   
5. Y. Tang, F. Pingitore, A. Mukhopadhyay, R. Phan, T. C. Hazen, J. D. Keasling Pathway confirmation and flux analysis of central metabolic pathways in Desulfovibrio vulgaris Hildenborough using GC-MS and FT-ICR mass spectrometry J. Bacteriol. 2007
   
6. A. Mukhopadhyay, Z. He, E. J. Alm, A. P. Arkin, E. E. Baidoo, S. C. Borglin, W. Chen, T. C. Hazen, Q. He, H-Y. Holman, K. Huang, R. Huang, D. C. Joyner, N. Katz, M. Keller, P. Oeller, A. Redding, J. Sun, J. Wall, J. Wei, Z. Yang, H-C. Yen, J. Zhou, J. D. Keasling Salt Stress in Desulfovibrio vulgaris Hildenborough: an Integrated Genomics Approach J. Bacteriol. 2006 188: 4068-4078.
   
7. A. M. Redding, A. Mukhopadhyay, D. C. Joyner, T. C. Hazen, J. D. Keasling Study of nitrate stress in Desulfovibrio vulgaris Hildenborough using iTRAQ proteomics Brief Funct Genomic Proteomic 2006, 5(2):133-143
   
8. R. Gao, A. Mukhopadhyay, F. Fang, D. G. Lynn Constitutive Activation of Two-Component Response Regulators: Characterization of VirG Activation in Agrobacterium tumefaciens. J Bacteriol 2006, 188(14):5204-5211
   
9. A. Mukhopadhyay, R. Gao, D. G. Lynn Integrating Input from Multiple Signals: The VirA/VirG Two-Component System of Agrobacterium tumefaciens. ChemBioChem 2004 5, 1535-1542
   
10. Y. Wang, A. Mukhopadhyay, V. R. Howitz, A. N. Binns, D. G. Lynn Construction of an efficient expression system for Agrobacterium tumefaciens based on the coliphage T5 promoter. Gene 2000, 242:105-114